Data and code availability
Sequencing data of de-identified human subject specimens have been deposited at dbGaP: phs002407.v1.p1; expression transcript count matrices at GEO: GSE178341. Additional resources for exploring the data are available at our supplemental web page (https://broad.io/crchubs) and the Broad Institute’s Single Cell Portal (https://singlecell.broadinstitute.org/single_cell/study/SCP1162). Accession numbers and links to web pages are also listed in the Key resources table.
The principal analysis code used to analyze data and generate the results presented here has been deposited at github (https://github.com/matanhofree/crc-immune-hubs). The github link is also listed in the key resources table.
Any additional information required to reanalyze the data reported in this paper is available from the lead contact upon request.