Spatial Organ Atlas: Mouse Brain


Explore the GeoMx WTA Mouse Brain Data

Visualized is a coronal section of a mouse brain stained with NeuN, GFAP, Iba1, and DNA morphology markers.  Coronal sections from the mouse brain facilitate spatial gene expression analysis across multiple functional domains.

Mouse Brain Metadata
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Mouse Brain Metadata

This cohort contains 4 samples:

  • Section:  Coronal
  • Strain:  4 C57BL/6 WT mice
  • Age Range:  8 to 12 weeks

Whole Transcriptome Atlas Profiling​:

  • >20,000 genes​
  • 5μm FFPE tissue section​

Area of Illumination (AOI) Profiling Strategy:​

  • 360 AOIs total
  • Geometric profiling in >10 functional areas of the brain​
  • Cell type-specific profiling of neurons across cortical layers and other functional areas

Morphology Markers:

  • NeuN – Neurons
  • GFAP – Astrocytes
  • Iba1 – Microglia
  • DNA​ –  Nuclei
Data Downloads

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