Spatial Organ Atlas: Human Brain


Explore the GeoMx WTA Human Brain Data

Cross-section of a human brain showing the hippocampus and the cortex. This single human brain section is stained with morphology markers for NeuN, GFAP, Iba1, and DNA.

Human Brain Metadata
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Human Brain Metadata

This cohort contains 5 samples:

  • Sex: Male
  • Race: White
  • Age Range: 70 years to 90 years
  • BMI: 22 to 29

Whole Transcriptome Atlas Profiling​:

  • >18,000 genes​
  • 5μm FFPE tissue section​

Area of Illumination (AOI) Profiling Strategy:​

  • 252 AOIs total
  • Subregions of cortex and hippocampus ​
  • Cell type enriched and geometric areas of illumination

Morphology Markers:​

  • NeuN:  Neurons
  • Iba1: ​Microglia
  • GFAP: Astrocytes
  • DNA: Nuclei
Data Downloads

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