nCounter® V2 Cancer Copy Number Assay

Multiplexed copy number quantification for 87 genes commonly amplified or deleted in cancer including PIK3CA, AKT, PTEN, BRCA, ERBB2, and MYC (see Table 1). nCounter Copy number assays can also be ordered as a custom assay for up to 800 targets.

  • Optimized for FFPE samples
  • Copy number analysis of 87 genes commonly amplified or deleted in cancer
  • Digital quantitation of highly amplified genes
  • Specific detection of bi-allelic and multi-allelic number of copies

v2 Cancer CN Assay Gene List


Feature Specifications
Genomic regions analyzed in one reaction 87 genes commonly amplified or deleted in cancer (average 3 probes/region)
Recommended amount of starting material 300 ng total genomic DNA
Sample types supported

Human genomic DNA from FFPE samples, fresh or frozen tissue, or cell lines
Number of copies detected 0-4, multiallelic
nCounter® Prep Station throughput 12 samples < 2.5 hours
nCounter® Digital Analyzer throughput 12 samples / 2.7 hours
Controls 54 invariant genomic regions and spike-in process controls

Click here to view publications regarding CNV.

Product Description Catalog Number Unit Size
nCounter® v2 Cancer CN Assay CSO Enables copy number quantification for 87 genes commonly amplified or deleted in cancer. Optimized for FFPE analysis XT-CSO-CAN2-12 12 reactions

For Research Use Only. Not for use in diagnostic procedures.