nCounter® Custom CodeSets

We can design and build Custom CodeSets for your specified gene targets. Our Bioinformatics team has designed CodeSets for a large variety of organisms and analysis types that include: Gene Expression, Copy Number Variation (CNV), Fusion or Splice Variant detection, Ribosomal RNA, and more. For basic gene expression designs of human, mouse, or rat genes, we offer a web-based tool, nDesign™ Gateway, for exploring gene content and designing your own CodeSet. For more complex designs or those for other organisms, NanoString’s bioinformatics team provides expert design services. Contact us to discuss your design.

  • CodeSets designed to your specifications
  • Include up to 800 targets of interest
  • Designs to any organism with known sequence
  • Expert Bioinformatics support

nCounter Custom CodeSet Design Process

Update Your CodeSet with CodeSet-Plus Research Products

Custom CodeSets can be updated over time with up to 30 additional targets through the use of CodeSet Plus, small custom CodeSets that can be spiked into larger CodeSets.

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Product Description Catalog Number NAV Number Unit Size
nCounter mRNA Custom CodeSet Custom CodeSet for detection and quantification of mRNA Transcripts (including Fusion Genes and Splice Variants) Varies by product configuration Varies by product configuration Per probe
nCounter CNV Custom CodeSet Custom CodeSet for Copy Number Variation analysis Varies by product configuration Varies by product configuration Per probe
nCounter ChIP-String Custom CodeSet Custom CodeSet for analysis DNA prepared by Chromatin Immunoprecipitation (ChIP) Varies by product configuration Varies by product configuration Per probe
nCounter CodeSet Plus Custom CodeSet containing up to 30 probes that can be spike-in into another Custom CodeSet. Varies by product configuration Varies by product configuration Per probe

For Research Use Only. Not for use in diagnostic procedures.